Plugin API for RKViewer
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Plugin API for RKViewer
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
A
a (rkviewer.config.Color attribute)
AbstractNodeSchema (class in rkviewer.iodine)
active_tab_fg (rkviewer.config.ThemeSchema attribute)
,
[1]
add() (rkviewer.canvas.utils.SetSubject method)
add_alias_node() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
add_compartment_g() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
ADD_COMPARTMENTS (rkviewer.canvas.state.InputMode attribute)
add_node_g() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
ADD_NODES (rkviewer.canvas.state.InputMode attribute)
add_plugin_schema() (in module rkviewer.config)
add_reaction_g() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
addAliasNode() (in module rkviewer.iodine)
AddButton() (rkviewer.utils.ButtonGroup method)
addCompartment() (in module rkviewer.iodine)
(rkviewer.iodine.TNetwork method)
AddMenuItem() (rkviewer.view.MainFrame method)
addNode() (in module rkviewer.iodine)
(rkviewer.iodine.TNetwork method)
AddPluginElement() (rkviewer.canvas.canvas.Canvas method)
AddPluginPages() (rkviewer.view.TabbedToolbar method)
addReaction() (rkviewer.iodine.TNetwork method)
alias_for_reaction() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
aliasForReaction() (in module rkviewer.iodine)
AliasSchema (class in rkviewer.iodine)
aligned() (rkviewer.canvas.geometry.Rect method)
Alignment (class in rkviewer.canvas.canvas)
alignment (rkviewer.canvas.data.TextPrim attribute)
(rkviewer.iodine.TextSchema attribute)
AlignSelectedNodes() (rkviewer.canvas.canvas.Canvas method)
AlphaToText() (in module rkviewer.forms)
append() (rkviewer.events.HandlerChain method)
AppendCenterSpacer() (rkviewer.view.Toolbar method)
AppendControl() (rkviewer.forms.FieldGrid method)
AppendLine() (rkviewer.forms.FieldGrid method)
AppendModeButton() (rkviewer.view.ModePanel method)
AppendNormalButton() (rkviewer.view.ModePanel method)
AppendSeparator() (rkviewer.view.ModePanel method)
AppendSpacer() (rkviewer.forms.FieldGrid method)
AppendSubtitle() (rkviewer.forms.FieldGrid method)
AppendTool() (rkviewer.view.Toolbar method)
AppSettings (class in rkviewer.config)
arrow_adjusted_coords (rkviewer.canvas.data.SpeciesBezier attribute)
arrow_tip (rkviewer.canvas.state.CanvasState attribute)
arrow_tip_changed() (rkviewer.canvas.data.SpeciesBezier method)
ArrowTip (class in rkviewer.canvas.state)
ArrowTipChanged() (rkviewer.canvas.canvas.Canvas method)
as_int() (rkviewer.canvas.geometry.Vec2 method)
as_tuple() (rkviewer.canvas.geometry.Rect method)
(rkviewer.canvas.geometry.Vec2 method)
attach() (rkviewer.canvas.utils.Subject method)
B
b (rkviewer.config.Color attribute)
BAD_STOICH (rkviewer.iodine.ErrorCode attribute)
base (rkviewer.canvas.data.HandleData attribute)
,
[1]
baseNodes (rkviewer.iodine.TNetwork attribute)
bezier (rkviewer.canvas.elements.ReactionElement attribute)
bezier_curves() (in module rkviewer.iodine)
bezier_points (rkviewer.canvas.data.SpeciesBezier attribute)
bezierCurves (rkviewer.canvas.data.Reaction attribute)
(rkviewer.canvas.data.SpeciesBezier attribute)
,
[1]
(rkviewer.iodine.ReactionSchema attribute)
(rkviewer.iodine.TReaction attribute)
BezierHandle (class in rkviewer.canvas.elements)
BezJ (in module rkviewer.canvas.data)
BezJPrime (in module rkviewer.canvas.data)
bg_color (rkviewer.canvas.data.TextPrim attribute)
(rkviewer.iodine.TextSchema attribute)
bhandles (rkviewer.canvas.elements.ReactionElement attribute)
bind_controller() (rkviewer.mvc.IView method)
(rkviewer.view.RKView method)
bind_error_callback() (rkviewer.plugin_manage.PluginManager method)
bind_handler() (in module rkviewer.events)
border (rkviewer.canvas.data.Compartment attribute)
border_color (rkviewer.canvas.data.CirclePrim attribute)
(rkviewer.canvas.data.Node attribute)
(rkviewer.canvas.data.Node property)
(rkviewer.canvas.data.PolygonPrim attribute)
(rkviewer.canvas.data.RectanglePrim attribute)
(rkviewer.iodine.PolygonSchema attribute)
(rkviewer.iodine.PrimitiveSchema attribute)
border_width (rkviewer.canvas.data.CirclePrim attribute)
(rkviewer.canvas.data.Compartment attribute)
(rkviewer.canvas.data.Node attribute)
(rkviewer.canvas.data.Node property)
(rkviewer.canvas.data.PolygonPrim attribute)
(rkviewer.canvas.data.RectanglePrim attribute)
(rkviewer.iodine.PolygonSchema attribute)
(rkviewer.iodine.PrimitiveSchema attribute)
BOTTOM (rkviewer.canvas.canvas.Alignment attribute)
(rkviewer.canvas.geometry.Direction attribute)
BottomBar (class in rkviewer.view)
bounding_rect (rkviewer.canvas.elements.SelectBox attribute)
bounding_rect() (rkviewer.canvas.elements.CanvasElement method)
(rkviewer.canvas.elements.CompartmentElt method)
(rkviewer.canvas.elements.NodeElement method)
(rkviewer.canvas.elements.ReactionCenter method)
(rkviewer.canvas.elements.ReactionElement method)
bounds (rkviewer.canvas.state.CanvasState attribute)
BOUNDS_EPS (in module rkviewer.canvas.canvas)
BOUNDS_EPS_VEC (in module rkviewer.canvas.canvas)
btn_bg (rkviewer.config.ThemeSchema attribute)
,
[1]
btn_border (rkviewer.config.ThemeSchema attribute)
,
[1]
btn_fg (rkviewer.config.ThemeSchema attribute)
,
[1]
btn_hover_bg (rkviewer.config.ThemeSchema attribute)
,
[1]
btn_hover_fg (rkviewer.config.ThemeSchema attribute)
,
[1]
ButtonGroup (class in rkviewer.utils)
by_user (rkviewer.events.DidChangeCompartmentOfNodesEvent attribute)
,
[1]
(rkviewer.events.DidModifyNodesEvent attribute)
,
[1]
(rkviewer.events.DidModifyReactionEvent attribute)
,
[1]
(rkviewer.events.DidMoveBezierHandleEvent attribute)
,
[1]
(rkviewer.events.DidMoveCompartmentsEvent attribute)
,
[1]
(rkviewer.events.DidMoveNodesEvent attribute)
,
[1]
(rkviewer.events.DidRedoEvent attribute)
(rkviewer.events.DidResizeCompartmentsEvent attribute)
,
[1]
(rkviewer.events.DidResizeNodesEvent attribute)
,
[1]
(rkviewer.events.DidUndoEvent attribute)
C
CalcScrolledPositionFloat() (rkviewer.canvas.canvas.Canvas method)
CalcUnscrolledPositionFloat() (rkviewer.canvas.canvas.Canvas method)
Callback (rkviewer.canvas.overlays.Minimap attribute)
,
[1]
(rkviewer.utils.ButtonGroup attribute)
,
[1]
callbacks (rkviewer.plugin_manage.PluginManager attribute)
Canvas (class in rkviewer.canvas.canvas)
canvas (rkviewer.canvas.elements.NodeElement attribute)
(rkviewer.canvas.elements.ReactionElement attribute)
(rkviewer.forms.EditPanelForm attribute)
canvas_bg (rkviewer.config.ThemeSchema attribute)
,
[1]
canvas_height (rkviewer.config.ThemeSchema attribute)
,
[1]
canvas_outside_bg (rkviewer.config.ThemeSchema attribute)
,
[1]
canvas_width (rkviewer.config.ThemeSchema attribute)
,
[1]
CanvasDidUpdateEvent (class in rkviewer.events)
CanvasElement (class in rkviewer.canvas.elements)
CanvasEvent (class in rkviewer.events)
CanvasOverlay (class in rkviewer.canvas.overlays)
CanvasState (class in rkviewer.canvas.state)
CanvasUpdated() (rkviewer.forms.ReactionForm method)
CENTER (rkviewer.canvas.canvas.Alignment attribute)
(rkviewer.canvas.data.TextAlignment attribute)
center_el (rkviewer.canvas.elements.ReactionElement attribute)
center_moved() (rkviewer.canvas.data.ReactionBezier method)
center_point (rkviewer.canvas.geometry.Rect property)
center_pos (rkviewer.canvas.data.Reaction attribute)
CENTER_RATIO (rkviewer.canvas.data.ReactionBezier attribute)
centerHandlePos (rkviewer.iodine.ReactionSchema attribute)
(rkviewer.iodine.TReaction attribute)
centerPos (rkviewer.iodine.ReactionSchema attribute)
(rkviewer.iodine.TReaction attribute)
centroid_handle (rkviewer.canvas.data.SpeciesBezier attribute)
change_opacity() (in module rkviewer.utils)
ChangePairValue() (in module rkviewer.forms)
ChoiceField (class in rkviewer.iodine)
ChoiceItem (class in rkviewer.canvas.data)
ChoicePrimitiveControl() (rkviewer.forms.PrimitiveGrid method)
CIRCLE (rkviewer.canvas.data.ModifierTipStyle attribute)
circle_bounds() (in module rkviewer.canvas.geometry)
CirclePrim (class in rkviewer.canvas.data)
CircleSchema (class in rkviewer.iodine)
clamp_point() (in module rkviewer.canvas.geometry)
clamp_point_outside() (in module rkviewer.canvas.geometry)
clamp_rect_pos() (in module rkviewer.canvas.geometry)
clamp_rect_size() (in module rkviewer.canvas.geometry)
clear_network() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
ClearCurrentSelection() (rkviewer.canvas.canvas.Canvas method)
clearNetwork() (in module rkviewer.iodine)
clearNetworks() (in module rkviewer.iodine)
clearReactions() (in module rkviewer.iodine)
CLOCKWISE (rkviewer.canvas.geometry.Orientation attribute)
clone() (rkviewer.canvas.state.ArrowTip method)
cnetroid_handle (rkviewer.canvas.data.SpeciesBezier attribute)
COLINEAR (rkviewer.canvas.geometry.Orientation attribute)
Color (class in rkviewer.config)
color (rkviewer.config.Font attribute)
(rkviewer.iodine.FontSchema attribute)
ColorCallback (rkviewer.forms.EditPanelForm attribute)
ColorField (class in rkviewer.config)
ColorPrimitiveControl() (rkviewer.forms.PrimitiveGrid method)
colorToRGB() (in module rkviewer.iodine)
comb() (in module rkviewer.canvas.data)
commit_node_pos() (rkviewer.canvas.elements.ReactionElement method)
comp_border (rkviewer.config.ThemeSchema attribute)
,
[1]
comp_border_width (rkviewer.config.ThemeSchema attribute)
,
[1]
comp_corner_radius (rkviewer.config.ThemeSchema attribute)
comp_fill (rkviewer.config.ThemeSchema attribute)
,
[1]
comp_idx (rkviewer.canvas.data.Node attribute)
comp_idx_map (rkviewer.canvas.canvas.Canvas attribute)
comp_indices (rkviewer.canvas.elements.SelectBox attribute)
comp_min_ratio (rkviewer.canvas.elements.SelectBox attribute)
COMP_ONLY (rkviewer.canvas.elements.SelectBox.SMode attribute)
Compartment (class in rkviewer.canvas.data)
compartment (rkviewer.events.DidAddCompartmentEvent attribute)
compartment_indices (rkviewer.events.DidDeleteEvent attribute)
,
[1]
(rkviewer.events.DidMoveCompartmentsEvent attribute)
,
[1]
(rkviewer.events.DidResizeCompartmentsEvent attribute)
,
[1]
(rkviewer.events.SelectionDidUpdateEvent attribute)
,
[1]
COMPARTMENT_LAYER (rkviewer.canvas.canvas.Canvas attribute)
CompartmentElt (class in rkviewer.canvas.elements)
CompartmentForm (class in rkviewer.forms)
CompartmentIndexError
compartments (rkviewer.canvas.canvas.Canvas property)
(rkviewer.canvas.elements.SelectBox attribute)
(rkviewer.iodine.NetworkSchema attribute)
(rkviewer.iodine.TNetwork attribute)
CompartmentSchema (class in rkviewer.iodine)
compi (rkviewer.iodine.NodeSchema attribute)
(rkviewer.iodine.TAbstractNode attribute)
(rkviewer.iodine.TAliasNode attribute)
(rkviewer.iodine.TNode attribute)
COMPI_NOT_FOUND (rkviewer.iodine.ErrorCode attribute)
composite_shape (rkviewer.canvas.data.Node attribute)
CompositeShape (class in rkviewer.canvas.data)
CompositeShapeFactory (class in rkviewer.canvas.data)
CompositeShapeSchema (class in rkviewer.iodine)
CompsMovedOrResized() (rkviewer.forms.CompartmentForm method)
compute_centroid() (in module rkviewer.canvas.data)
compute_min_ratio() (rkviewer.canvas.elements.SelectBox method)
CONTAINED (rkviewer.canvas.elements.SelectBox.SMode attribute)
contains() (rkviewer.canvas.geometry.Rect method)
(rkviewer.canvas.utils.SetSubject method)
Controller (class in rkviewer.controller)
controller (rkviewer.canvas.canvas.Canvas attribute)
(rkviewer.canvas.elements.ReactionElement attribute)
(rkviewer.forms.EditPanelForm attribute)
convert_position() (in module rkviewer.utils)
CopySelected() (rkviewer.canvas.canvas.Canvas method)
corner_radius (rkviewer.canvas.data.RectanglePrim attribute)
(rkviewer.iodine.PolygonSchema attribute)
(rkviewer.iodine.RectangleSchema attribute)
COUNTERCLOCKWISE (rkviewer.canvas.geometry.Orientation attribute)
create_dialog() (rkviewer.plugin_manage.PluginManager method)
create_excepthook() (in module rkviewer.main)
CreateAliases() (rkviewer.canvas.canvas.Canvas method)
CreateBiBi() (in module rkviewer.iodine)
CreateBiUni() (in module rkviewer.iodine)
CreateChildren() (rkviewer.forms.EditPanelForm method)
CreateColorControl() (rkviewer.forms.FieldGrid method)
CreateCompartmentElement() (rkviewer.canvas.canvas.Canvas method)
CreateConfigDir() (rkviewer.view.MainFrame method)
CreateControls() (rkviewer.forms.CompartmentForm method)
(rkviewer.forms.EditPanelForm method)
(rkviewer.forms.NodeForm method)
(rkviewer.forms.ReactionForm method)
CreateNodeElement() (rkviewer.canvas.canvas.Canvas method)
createReaction() (in module rkviewer.iodine)
CreateReactionElement() (rkviewer.canvas.canvas.Canvas method)
CreateReactionFromMarked() (rkviewer.canvas.canvas.Canvas method)
CreateSlider() (rkviewer.view.BottomBar method)
CreateSpinCtrl() (rkviewer.forms.FieldGrid method)
CreateTextCtrl() (rkviewer.forms.FieldGrid method)
CreateUniBi() (in module rkviewer.iodine)
createUniUni() (in module rkviewer.iodine)
CURSOR_TYPES (rkviewer.canvas.elements.SelectBox attribute)
,
[1]
CURVE_SLACK (in module rkviewer.canvas.data)
CutSelected() (rkviewer.canvas.canvas.Canvas method)
D
data (rkviewer.canvas.elements.BezierHandle attribute)
,
[1]
default_handle_positions() (in module rkviewer.canvas.utils)
delete_compartment() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
delete_node() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
delete_reaction() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
deleteCompartment() (in module rkviewer.iodine)
deleteNetwork() (in module rkviewer.iodine)
deleteNode() (in module rkviewer.iodine)
deleteReaction() (in module rkviewer.iodine)
DeleteSelectedItems() (rkviewer.canvas.canvas.Canvas method)
dest_beziers (rkviewer.canvas.data.ReactionBezier attribute)
,
[1]
dest_c_handle (rkviewer.canvas.data.Reaction attribute)
(rkviewer.canvas.data.ReactionBezier attribute)
dest_handle_moved() (rkviewer.canvas.data.ReactionBezier method)
destMap (rkviewer.iodine.TNetwork attribute)
destroy() (rkviewer.canvas.elements.CanvasElement method)
(rkviewer.canvas.elements.ReactionElement method)
destroyed (rkviewer.canvas.elements.CanvasElement attribute)
,
[1]
(rkviewer.canvas.elements.CompartmentElt attribute)
detach() (rkviewer.canvas.utils.Subject method)
determinant() (in module rkviewer.canvas.geometry)
device_pos (rkviewer.canvas.overlays.Minimap attribute)
,
[1]
DidAddCompartmentEvent (class in rkviewer.events)
DidAddNodeEvent (class in rkviewer.events)
DidAddReactionEvent (class in rkviewer.events)
DidChangeCompartmentOfNodesEvent (class in rkviewer.events)
DidCommitDragEvent (class in rkviewer.events)
DidDeleteEvent (class in rkviewer.events)
DidModifyCompartmentsEvent (class in rkviewer.events)
DidModifyNodesEvent (class in rkviewer.events)
DidModifyReactionEvent (class in rkviewer.events)
DidMoveBezierHandleEvent (class in rkviewer.events)
DidMoveCompartmentsEvent (class in rkviewer.events)
DidMoveNodesEvent (class in rkviewer.events)
DidMoveReactionCenterEvent (class in rkviewer.events)
DidPaintCanvasEvent (class in rkviewer.events)
DidRedoEvent (class in rkviewer.events)
DidResizeCompartmentsEvent (class in rkviewer.events)
DidResizeNodesEvent (class in rkviewer.events)
DidUndoEvent (class in rkviewer.events)
Dim (class in rkviewer.config)
Dim2 (class in rkviewer.config)
direct (rkviewer.events.DidMoveBezierHandleEvent attribute)
,
[1]
Direction (class in rkviewer.canvas.geometry)
do_paint() (rkviewer.canvas.data.ReactionBezier method)
(rkviewer.canvas.data.SpeciesBezier method)
DoPaint() (rkviewer.canvas.overlays.CanvasOverlay method)
(rkviewer.canvas.overlays.Minimap method)
dot() (rkviewer.canvas.geometry.Vec2 method)
drag_border (rkviewer.config.ThemeSchema attribute)
,
[1]
drag_border_width (rkviewer.config.ThemeSchema attribute)
,
[1]
drag_fill (rkviewer.config.ThemeSchema attribute)
,
[1]
drag_sel_comps_idx (rkviewer.canvas.canvas.Canvas attribute)
drag_sel_nodes_idx (rkviewer.canvas.canvas.Canvas attribute)
dragged (rkviewer.events.DidMoveCompartmentsEvent attribute)
,
[1]
(rkviewer.events.DidMoveNodesEvent attribute)
,
[1]
(rkviewer.events.DidMoveReactionCenterEvent attribute)
,
[1]
(rkviewer.events.DidResizeCompartmentsEvent attribute)
,
[1]
(rkviewer.events.DidResizeNodesEvent attribute)
,
[1]
DRAGGED_NODE_LAYER (rkviewer.canvas.canvas.Canvas attribute)
dragging (rkviewer.canvas.overlays.Minimap property)
draw_circle_to_gc() (in module rkviewer.canvas.elements)
draw_composite_shape() (in module rkviewer.canvas.elements)
draw_polygon_to_gc() (in module rkviewer.canvas.elements)
draw_rect() (in module rkviewer.canvas.utils)
draw_rect_to_gc() (in module rkviewer.canvas.elements)
draw_text_to_gc() (in module rkviewer.canvas.elements)
DrawActiveRectToImage() (rkviewer.canvas.canvas.Canvas method)
DrawBackgroundToGC() (rkviewer.canvas.canvas.Canvas method)
drawing_drag (rkviewer.canvas.canvas.Canvas attribute)
DrawModelToGC() (rkviewer.canvas.canvas.Canvas method)
DrawVisualCuesToGC() (rkviewer.canvas.canvas.Canvas method)
dump_network() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
dumpNetwork() (in module rkviewer.iodine)
DUPLICATE_RATIO (rkviewer.canvas.data.ReactionBezier attribute)
DUPLICATE_ROT (rkviewer.canvas.data.ReactionBezier attribute)
E
edit_panel_width (rkviewer.config.ThemeSchema attribute)
EditPanel (class in rkviewer.view)
EditPanelForm (class in rkviewer.forms)
EditSettings() (rkviewer.view.MainFrame method)
elem_abs() (rkviewer.canvas.geometry.Vec2 method)
elem_div() (rkviewer.canvas.geometry.Vec2 method)
elem_mul() (rkviewer.canvas.geometry.Vec2 method)
elements (rkviewer.canvas.overlays.Minimap attribute)
,
[1]
enable_plugins (rkviewer.config.RuntimeVariables attribute)
enabled (rkviewer.canvas.elements.CanvasElement attribute)
,
[1]
(rkviewer.canvas.elements.CompartmentElt attribute)
endGroup() (in module rkviewer.iodine)
EnumField (class in rkviewer.iodine)
ErrorCode (class in rkviewer.iodine)
even_round() (in module rkviewer.utils)
ExceptionDialog (class in rkviewer.main)
ExportAs() (rkviewer.view.MainFrame method)
ExportNetwork() (rkviewer.view.MainFrame method)
ExternalUpdate() (rkviewer.forms.EditPanelForm method)
F
family (rkviewer.iodine.FontSchema attribute)
FieldGrid (class in rkviewer.forms)
FILE_ERROR (rkviewer.iodine.ErrorCode attribute)
FileError
fill (rkviewer.canvas.data.Compartment attribute)
fill_color (rkviewer.canvas.data.CirclePrim attribute)
(rkviewer.canvas.data.Node attribute)
(rkviewer.canvas.data.Node property)
(rkviewer.canvas.data.PolygonPrim attribute)
(rkviewer.canvas.data.Reaction attribute)
(rkviewer.canvas.data.RectanglePrim attribute)
(rkviewer.iodine.PolygonSchema attribute)
(rkviewer.iodine.PrimitiveSchema attribute)
fillColor (rkviewer.iodine.CompartmentSchema attribute)
(rkviewer.iodine.ReactionSchema attribute)
(rkviewer.iodine.TCompartment attribute)
(rkviewer.iodine.TReaction attribute)
findMaxX() (rkviewer.canvas.canvas.Canvas method)
findMaxY() (rkviewer.canvas.canvas.Canvas method)
findMinX() (rkviewer.canvas.canvas.Canvas method)
findMinY() (rkviewer.canvas.canvas.Canvas method)
FitNodeSizeToText() (rkviewer.canvas.canvas.Canvas method)
FloatCallback (rkviewer.forms.EditPanelForm attribute)
floating (rkviewer.iodine.NodeSchema attribute)
(rkviewer.iodine.TNode attribute)
floatingNode (rkviewer.canvas.data.Node attribute)
FloatPrimitiveControl() (rkviewer.forms.PrimitiveGrid method)
Font (class in rkviewer.config)
font_color (rkviewer.canvas.data.TextPrim attribute)
(rkviewer.iodine.TextSchema attribute)
font_family (rkviewer.iodine.TextSchema attribute)
font_size (rkviewer.canvas.data.TextPrim attribute)
(rkviewer.iodine.TextSchema attribute)
font_style (rkviewer.iodine.TextSchema attribute)
font_weight (rkviewer.iodine.TextSchema attribute)
FontField (class in rkviewer.config)
FontSchema (class in rkviewer.iodine)
from_rgb() (rkviewer.config.Color class method)
FullRedraw() (rkviewer.canvas.canvas.Canvas method)
G
g (rkviewer.config.Color attribute)
gc (rkviewer.events.DidPaintCanvasEvent attribute)
,
[1]
gchain() (in module rkviewer.utils)
gen_polygon_pts() (in module rkviewer.canvas.data)
get_application_position() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_bounding_rect() (in module rkviewer.canvas.geometry)
(rkviewer.canvas.data.ReactionBezier method)
(rkviewer.canvas.data.SpeciesBezier method)
get_center_handle() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_compartment_by_index() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_compartment_indices() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_compartment_of_node() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_composite_shape_at() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_composite_shape_list() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_default_raw_settings() (in module rkviewer.config)
get_dest_node_handle() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_dest_node_stoich() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_list_of_compartments() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_list_of_dest_indices() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_list_of_node_ids() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_list_of_nodes() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_list_of_reactions() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_list_of_src_indices() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_local_path() (in module rkviewer.utils)
get_modifier_tip_style() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_node_by_index() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_node_id() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_node_index() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_node_indices() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_node_shape() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_node_shape_index() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_nodes_by_ident() (in module rkviewer.canvas.utils)
get_nodes_by_idx() (in module rkviewer.canvas.utils)
get_nodes_in_compartment() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_plugins_by_category() (rkviewer.plugin_manage.PluginManager method)
get_reaction_by_index() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_reaction_index() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_reaction_indices() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_reaction_modifiers() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_reactions_as_product() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_reactions_as_reactant() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_rxns_by_idx() (in module rkviewer.canvas.utils)
get_setting() (in module rkviewer.config)
get_src_node_handle() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_src_node_stoich() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
get_theme() (in module rkviewer.config)
get_theme_fn() (in module rkviewer.iodine)
GetBoundingRect() (rkviewer.canvas.canvas.Canvas method)
GetCompartment() (rkviewer.canvas.canvas.Canvas method)
getCompartmentFillColor() (in module rkviewer.iodine)
getCompartmentID() (in module rkviewer.iodine)
getCompartmentOfNode() (in module rkviewer.iodine)
getCompartmentOutlineColor() (in module rkviewer.iodine)
getCompartmentOutlineThickness() (in module rkviewer.iodine)
getCompartmentPosition() (in module rkviewer.iodine)
getCompartmentSize() (in module rkviewer.iodine)
getCompartmentVolume() (in module rkviewer.iodine)
getCompositeShapeAt() (in module rkviewer.iodine)
GetConfigDir() (in module rkviewer.config)
getDestReactions() (in module rkviewer.iodine)
getErrorCode() (in module rkviewer.iodine)
getListOfCompartmentIndices() (in module rkviewer.iodine)
getListOfCompartments() (in module rkviewer.iodine)
getListOfCompositeShapes() (in module rkviewer.iodine)
getListOfNetworks() (in module rkviewer.iodine)
getListOfNodeIDs() (in module rkviewer.iodine)
getListOfNodeIndices() (in module rkviewer.iodine)
getListOfReactionDestNodes() (in module rkviewer.iodine)
getListOfReactionDestStoich() (in module rkviewer.iodine)
getListOfReactionIDs() (in module rkviewer.iodine)
getListOfReactionIndices() (in module rkviewer.iodine)
getListOfReactionSrcNodes() (in module rkviewer.iodine)
getListOfReactionSrcStoich() (in module rkviewer.iodine)
getModifierTipStyle() (in module rkviewer.iodine)
GetMultiColor() (in module rkviewer.forms)
GetMultiEnum() (in module rkviewer.forms)
GetMultiFloatText() (in module rkviewer.forms)
GetMultiInt() (in module rkviewer.forms)
getNetworkID() (in module rkviewer.iodine)
getNetworkIndex() (in module rkviewer.iodine)
getNodeBorderColor() (in module rkviewer.iodine)
getNodeBorderColorAlpha() (in module rkviewer.iodine)
getNodeBorderColorRGB() (in module rkviewer.iodine)
getNodeBorderWidth() (in module rkviewer.iodine)
getNodeCenter() (in module rkviewer.iodine)
getNodeCoordinateAndSize() (in module rkviewer.iodine)
getNodeFillColor() (in module rkviewer.iodine)
getNodeFillColorAlpha() (in module rkviewer.iodine)
getNodeFillColorRGB() (in module rkviewer.iodine)
getNodeID() (in module rkviewer.iodine)
getNodeIndex() (in module rkviewer.iodine)
getNodeShape() (in module rkviewer.iodine)
getNodeShapeIndex() (in module rkviewer.iodine)
getNodesInCompartment() (in module rkviewer.iodine)
getNumberOfDestNodes() (in module rkviewer.iodine)
getNumberOfNetworks() (in module rkviewer.iodine)
getNumberOfNodes() (in module rkviewer.iodine)
getNumberOfReactions() (in module rkviewer.iodine)
getNumberOfSrcNodes() (in module rkviewer.iodine)
getOriginalIndex() (in module rkviewer.iodine)
getReactionCenterHandlePosition() (in module rkviewer.iodine)
getReactionCenterPos() (in module rkviewer.iodine)
GetReactionCentroids() (rkviewer.canvas.canvas.Canvas method)
getReactionDestNodeHandlePosition() (in module rkviewer.iodine)
getReactionDestNodeStoich() (in module rkviewer.iodine)
getReactionFillColor() (in module rkviewer.iodine)
getReactionFillColorAlpha() (in module rkviewer.iodine)
getReactionFillColorRGB() (in module rkviewer.iodine)
getReactionID() (in module rkviewer.iodine)
getReactionIndex() (in module rkviewer.iodine)
getReactionLineThickness() (in module rkviewer.iodine)
getReactionModifiers() (in module rkviewer.iodine)
getReactionRateLaw() (in module rkviewer.iodine)
getReactionSrcNodeHandlePosition() (in module rkviewer.iodine)
getReactionSrcNodeStoich() (in module rkviewer.iodine)
GetSelectedNodes() (rkviewer.canvas.canvas.Canvas method)
getSrcReactions() (in module rkviewer.iodine)
GetThemeSettingsPath() (in module rkviewer.config)
GRID (rkviewer.canvas.canvas.Alignment attribute)
group_action() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
H
handle (rkviewer.canvas.data.SpeciesBezier attribute)
,
[1]
handle_color (rkviewer.config.ThemeSchema attribute)
,
[1]
HANDLE_LAYER (rkviewer.canvas.canvas.Canvas attribute)
HANDLE_MULT (rkviewer.canvas.elements.SelectBox attribute)
HANDLE_RADIUS (rkviewer.canvas.elements.BezierHandle attribute)
,
[1]
HandleData (class in rkviewer.canvas.data)
handlePos (rkviewer.iodine.SpeciesNode attribute)
(rkviewer.iodine.TSpeciesNode attribute)
handler (rkviewer.events.HandlerNode attribute)
HandlerChain (class in rkviewer.events)
HandlerNode (class in rkviewer.events)
handles (rkviewer.canvas.data.Reaction attribute)
(rkviewer.canvas.data.ReactionBezier attribute)
head (rkviewer.events.HandlerChain attribute)
HexagonPrim (class in rkviewer.canvas.data)
HexagonSchema (class in rkviewer.iodine)
hgap (rkviewer.config.ThemeSchema attribute)
,
[1]
highlight_paint() (rkviewer.canvas.elements.CompartmentElt method)
highlighted_handle_color (rkviewer.config.ThemeSchema attribute)
,
[1]
HORIZONTAL (rkviewer.canvas.canvas.Alignment attribute)
hovered_element (rkviewer.canvas.canvas.Canvas attribute)
hovering (rkviewer.canvas.overlays.CanvasOverlay attribute)
,
[1]
I
IController (class in rkviewer.mvc)
id (rkviewer.canvas.data.Compartment attribute)
(rkviewer.canvas.data.Node attribute)
,
[1]
(rkviewer.canvas.data.Reaction attribute)
(rkviewer.iodine.AbstractNodeSchema attribute)
(rkviewer.iodine.CompartmentSchema attribute)
(rkviewer.iodine.NetworkSchema attribute)
(rkviewer.iodine.ReactionSchema attribute)
(rkviewer.iodine.TCompartment attribute)
(rkviewer.iodine.TNetwork attribute)
(rkviewer.iodine.TNode attribute)
(rkviewer.iodine.TReaction attribute)
ID_NOT_FOUND (rkviewer.iodine.ErrorCode attribute)
ID_REPEAT (rkviewer.iodine.ErrorCode attribute)
IDLE (rkviewer.canvas.elements.SelectBox.Mode attribute)
IDNotFoundError
IDRepeatError
in_group() (rkviewer.controller.Controller method)
IncrementZoom() (rkviewer.canvas.canvas.Canvas method)
index (rkviewer.canvas.data.Compartment attribute)
(rkviewer.canvas.data.Node attribute)
,
[1]
(rkviewer.canvas.data.Reaction attribute)
(rkviewer.events.DidAddCompartmentEvent attribute)
(rkviewer.events.DidAddReactionEvent attribute)
(rkviewer.iodine.AbstractNodeSchema attribute)
(rkviewer.iodine.TAbstractNode attribute)
(rkviewer.iodine.TAliasNode attribute)
(rkviewer.iodine.TNode attribute)
index_to_bz (rkviewer.canvas.elements.ReactionElement attribute)
indices (rkviewer.events.DidModifyCompartmentsEvent attribute)
,
[1]
(rkviewer.events.DidModifyNodesEvent attribute)
(rkviewer.events.DidModifyReactionEvent attribute)
,
[1]
init() (rkviewer.view.RKView method)
init_bezier() (in module rkviewer.canvas.data)
InitAndGetSizer() (rkviewer.forms.FieldGrid method)
INITIALIZED (in module rkviewer.canvas.data)
input_mode (rkviewer.canvas.state.CanvasState property)
input_mode_changed() (rkviewer.canvas.state.CanvasState method)
InputMode (class in rkviewer.canvas.state)
InputModeChanged() (rkviewer.canvas.canvas.Canvas method)
int_round() (in module rkviewer.utils)
intersect() (rkviewer.canvas.utils.SetSubject method)
IntPrimitiveControl() (rkviewer.forms.PrimitiveGrid method)
InWhichCompartment() (rkviewer.canvas.canvas.Canvas method)
iod_setter() (in module rkviewer.controller)
is_mouse_on() (rkviewer.canvas.data.ReactionBezier method)
is_on_curve() (rkviewer.canvas.data.SpeciesBezier method)
is_source (rkviewer.canvas.data.SpeciesBezier attribute)
,
[1]
IsBoundaryNode() (in module rkviewer.iodine)
isEmpty() (rkviewer.iodine.TStack method)
IsFloatingNode() (in module rkviewer.iodine)
IsNodeLocked() (in module rkviewer.iodine)
item_copy() (rkviewer.canvas.utils.SetSubject method)
items (rkviewer.canvas.data.CompositeShape attribute)
(rkviewer.iodine.CompositeShapeSchema attribute)
(rkviewer.iodine.TStack attribute)
IView (class in rkviewer.mvc)
J
JSON_ERROR (rkviewer.iodine.ErrorCode attribute)
JSONError
K
KEY_MOVE_LONG_STRIDE (rkviewer.canvas.canvas.Canvas attribute)
KEY_MOVE_STRIDE (rkviewer.canvas.canvas.Canvas attribute)
L
lastCompartmentIdx (rkviewer.iodine.TNetwork attribute)
lastNodeIdx (rkviewer.iodine.TNetwork attribute)
lastReactionIdx (rkviewer.iodine.TNetwork attribute)
layer_above() (in module rkviewer.canvas.elements)
layers (rkviewer.canvas.elements.CanvasElement attribute)
,
[1]
(rkviewer.canvas.elements.CompartmentElt attribute)
LazyRefresh() (rkviewer.canvas.canvas.Canvas method)
LEFT (rkviewer.canvas.canvas.Alignment attribute)
(rkviewer.canvas.data.TextAlignment attribute)
(rkviewer.canvas.geometry.Direction attribute)
linear_coefficients() (in module rkviewer.canvas.geometry)
LinePrim (class in rkviewer.canvas.data)
LineSchema (class in rkviewer.iodine)
list_field (rkviewer.config.ColorField attribute)
load_appSettings() (rkviewer.config.AppSettings method)
load_from() (rkviewer.plugin_manage.PluginManager method)
load_network() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
load_theme_settings() (in module rkviewer.config)
LoadFromJson() (rkviewer.view.MainFrame method)
loadNetwork() (in module rkviewer.iodine)
lockNode (rkviewer.canvas.data.Node attribute)
M
main() (in module rkviewer.main)
main_loop() (rkviewer.mvc.IView method)
(rkviewer.view.RKView method)
MainFrame (class in rkviewer.view)
MainPanel (class in rkviewer.view)
make_command_callback() (rkviewer.plugin_manage.PluginManager method)
make_drop_handle_func() (rkviewer.canvas.elements.ReactionElement method)
make_handle_moved_func() (rkviewer.canvas.data.ReactionBezier method)
make_notify() (rkviewer.plugin_manage.PluginManager method)
make_windowed_callback() (rkviewer.plugin_manage.PluginManager method)
MakeFloatCtrlFunction() (rkviewer.forms.FieldGrid method)
MakeSetDestStoichFunction() (rkviewer.forms.StoichSection method)
MakeSetSrcStoichFunction() (rkviewer.forms.StoichSection method)
ManagePlugins() (rkviewer.view.MainFrame method)
map() (rkviewer.canvas.geometry.Vec2 method)
map_rel_pos() (rkviewer.canvas.elements.SelectBox method)
MarkSelectedAsProducts() (rkviewer.canvas.canvas.Canvas method)
MarkSelectedAsReactants() (rkviewer.canvas.canvas.Canvas method)
MAX_ZOOM_LEVEL (rkviewer.canvas.canvas.Canvas attribute)
,
[1]
MIDDLE (rkviewer.canvas.canvas.Alignment attribute)
MILLIS_PER_REFRESH (rkviewer.canvas.canvas.Canvas attribute)
MIN_ZOOM_LEVEL (rkviewer.canvas.canvas.Canvas attribute)
,
[1]
Minimap (class in rkviewer.canvas.overlays)
mode (rkviewer.canvas.elements.SelectBox attribute)
(rkviewer.canvas.elements.SelectBox property)
mode_panel_width (rkviewer.config.ThemeSchema attribute)
,
[1]
ModelError
ModePanel (class in rkviewer.view)
modifier_line_color (rkviewer.config.ThemeSchema attribute)
modifier_line_width (rkviewer.config.ThemeSchema attribute)
modifier_tip_style (rkviewer.canvas.data.Reaction attribute)
modifiers (rkviewer.canvas.data.Reaction attribute)
(rkviewer.iodine.ReactionSchema attribute)
(rkviewer.iodine.TReaction attribute)
ModifierTipCallback() (rkviewer.forms.ReactionForm method)
ModifierTipStyle (class in rkviewer.canvas.data)
module
rkviewer
rkviewer.canvas
rkviewer.canvas.canvas
rkviewer.canvas.data
rkviewer.canvas.elements
rkviewer.canvas.geometry
rkviewer.canvas.overlays
rkviewer.canvas.state
rkviewer.canvas.utils
rkviewer.config
rkviewer.controller
rkviewer.events
rkviewer.forms
rkviewer.iodine
rkviewer.main
rkviewer.mvc
rkviewer.plugin_manage
rkviewer.utils
rkviewer.view
move_compartment() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
move_node() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
move_offset() (rkviewer.canvas.elements.SelectBox method)
moved_handler_id (rkviewer.canvas.elements.ReactionElement attribute)
MOVING (rkviewer.canvas.elements.SelectBox.Mode attribute)
multi_select (rkviewer.canvas.state.CanvasState attribute)
(rkviewer.canvas.state.CanvasState property)
N
name (rkviewer.canvas.data.CirclePrim attribute)
(rkviewer.canvas.data.CompositeShape attribute)
(rkviewer.canvas.data.HexagonPrim attribute)
(rkviewer.canvas.data.LinePrim attribute)
(rkviewer.canvas.data.PolygonPrim attribute)
(rkviewer.canvas.data.Primitive attribute)
(rkviewer.canvas.data.RectanglePrim attribute)
(rkviewer.canvas.data.TextPrim attribute)
(rkviewer.canvas.data.TrianglePrim attribute)
(rkviewer.iodine.CompositeShapeSchema attribute)
(rkviewer.iodine.FontSchema attribute)
(rkviewer.iodine.PrimitiveSchema attribute)
net_index (rkviewer.canvas.canvas.Canvas attribute)
(rkviewer.canvas.canvas.Canvas property)
(rkviewer.canvas.data.Compartment attribute)
(rkviewer.canvas.data.Node attribute)
,
[1]
(rkviewer.canvas.data.Reaction attribute)
(rkviewer.events.DidMoveBezierHandleEvent attribute)
,
[1]
(rkviewer.events.DidMoveReactionCenterEvent attribute)
,
[1]
(rkviewer.forms.EditPanelForm attribute)
NETI_NOT_FOUND (rkviewer.iodine.ErrorCode attribute)
NetIndexError
NetworkPrintout (class in rkviewer.view)
NetworkSchema (class in rkviewer.iodine)
new_compi (rkviewer.events.DidChangeCompartmentOfNodesEvent attribute)
,
[1]
new_network() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
newNetwork() (in module rkviewer.iodine)
NewNetwork() (rkviewer.view.MainFrame method)
next_ (rkviewer.events.HandlerNode attribute)
no_rzeros() (in module rkviewer.utils)
Node (class in rkviewer.canvas.data)
node (rkviewer.canvas.data.SpeciesBezier attribute)
(rkviewer.canvas.elements.NodeElement attribute)
(rkviewer.events.DidAddNodeEvent attribute)
,
[1]
node_border (rkviewer.config.ThemeSchema attribute)
,
[1]
node_border_width (rkviewer.config.ThemeSchema attribute)
,
[1]
node_fill (rkviewer.config.ThemeSchema attribute)
,
[1]
node_font_color (rkviewer.config.ThemeSchema attribute)
,
[1]
node_font_size (rkviewer.config.ThemeSchema attribute)
,
[1]
node_height (rkviewer.config.ThemeSchema attribute)
,
[1]
node_idx (rkviewer.canvas.data.SpeciesBezier attribute)
(rkviewer.canvas.elements.BezierHandle attribute)
,
[1]
node_idx_map (rkviewer.canvas.canvas.Canvas attribute)
node_index (rkviewer.events.DidMoveBezierHandleEvent attribute)
,
[1]
node_indices (rkviewer.canvas.elements.SelectBox attribute)
(rkviewer.events.DidChangeCompartmentOfNodesEvent attribute)
,
[1]
(rkviewer.events.DidDeleteEvent attribute)
,
[1]
(rkviewer.events.DidMoveNodesEvent attribute)
,
[1]
(rkviewer.events.DidResizeNodesEvent attribute)
,
[1]
(rkviewer.events.SelectionDidUpdateEvent attribute)
,
[1]
(rkviewer.iodine.TCompartment attribute)
node_intersection (rkviewer.canvas.data.SpeciesBezier attribute)
,
[1]
NODE_LAYER (rkviewer.canvas.canvas.Canvas attribute)
,
[1]
node_min_ratio (rkviewer.canvas.elements.SelectBox attribute)
NODE_NOT_FREE (rkviewer.iodine.ErrorCode attribute)
node_or_alias_dump() (in module rkviewer.iodine)
node_or_alias_load() (in module rkviewer.iodine)
node_width (rkviewer.config.ThemeSchema attribute)
,
[1]
NodeElement (class in rkviewer.canvas.elements)
NodeForm (class in rkviewer.forms)
nodei (rkviewer.forms.StoichInfo attribute)
NODEI_NOT_FOUND (rkviewer.iodine.ErrorCode attribute)
NodeIndexError
nodeLocked (rkviewer.iodine.AbstractNodeSchema attribute)
(rkviewer.iodine.TAbstractNode attribute)
(rkviewer.iodine.TAliasNode attribute)
(rkviewer.iodine.TNode attribute)
NodeNotFreeError
nodes (rkviewer.canvas.canvas.Canvas property)
(rkviewer.canvas.data.Compartment attribute)
(rkviewer.canvas.elements.SelectBox attribute)
,
[1]
(rkviewer.events.DidModifyNodesEvent attribute)
(rkviewer.iodine.CompartmentSchema attribute)
(rkviewer.iodine.NetworkSchema attribute)
(rkviewer.iodine.TNetwork attribute)
NODES_IN_ONE (rkviewer.canvas.elements.SelectBox.SMode attribute)
nodes_moved() (rkviewer.canvas.data.ReactionBezier method)
(rkviewer.canvas.elements.ReactionElement method)
NodeSchema (class in rkviewer.iodine)
NodesMovedOrResized() (rkviewer.forms.NodeForm method)
norm (rkviewer.canvas.geometry.Vec2 property)
norm_sq (rkviewer.canvas.geometry.Vec2 property)
normalized() (rkviewer.canvas.geometry.Vec2 method)
NOT_CONTAINED (rkviewer.canvas.elements.SelectBox.SMode attribute)
notify() (rkviewer.canvas.utils.Subject method)
nth_vertex() (rkviewer.canvas.geometry.Rect method)
O
Observer (class in rkviewer.canvas.utils)
offset (rkviewer.events.DidMoveCompartmentsEvent attribute)
,
[1]
(rkviewer.events.DidMoveNodesEvent attribute)
,
[1]
(rkviewer.events.DidMoveReactionCenterEvent attribute)
,
[1]
OK (rkviewer.iodine.ErrorCode attribute)
old_compi (rkviewer.events.DidChangeCompartmentOfNodesEvent attribute)
,
[1]
on_dropped (rkviewer.canvas.elements.BezierHandle attribute)
,
[1]
on_left_down() (rkviewer.canvas.elements.BezierHandle method)
(rkviewer.canvas.elements.CanvasElement method)
(rkviewer.canvas.elements.CompartmentElt method)
(rkviewer.canvas.elements.NodeElement method)
(rkviewer.canvas.elements.ReactionCenter method)
(rkviewer.canvas.elements.ReactionElement method)
(rkviewer.canvas.elements.SelectBox method)
on_left_up() (rkviewer.canvas.elements.BezierHandle method)
(rkviewer.canvas.elements.CanvasElement method)
(rkviewer.canvas.elements.ReactionCenter method)
(rkviewer.canvas.elements.SelectBox method)
on_mouse_drag() (rkviewer.canvas.elements.BezierHandle method)
(rkviewer.canvas.elements.CanvasElement method)
(rkviewer.canvas.elements.ReactionCenter method)
(rkviewer.canvas.elements.SelectBox method)
on_mouse_enter() (rkviewer.canvas.elements.BezierHandle method)
(rkviewer.canvas.elements.CanvasElement method)
(rkviewer.canvas.elements.ReactionCenter method)
(rkviewer.canvas.elements.ReactionElement method)
(rkviewer.canvas.elements.SelectBox method)
on_mouse_leave() (rkviewer.canvas.elements.BezierHandle method)
(rkviewer.canvas.elements.CanvasElement method)
(rkviewer.canvas.elements.ReactionCenter method)
(rkviewer.canvas.elements.SelectBox method)
on_mouse_move() (rkviewer.canvas.elements.CanvasElement method)
(rkviewer.canvas.elements.SelectBox method)
on_moved (rkviewer.canvas.elements.BezierHandle attribute)
,
[1]
on_msw() (in module rkviewer.utils)
on_paint() (rkviewer.canvas.elements.BezierHandle method)
(rkviewer.canvas.elements.CanvasElement method)
(rkviewer.canvas.elements.CompartmentElt method)
(rkviewer.canvas.elements.NodeElement method)
(rkviewer.canvas.elements.ReactionCenter method)
(rkviewer.canvas.elements.ReactionElement method)
(rkviewer.canvas.elements.SelectBox method)
on_paint_cue() (rkviewer.canvas.elements.BezierHandle method)
(rkviewer.canvas.elements.CanvasElement method)
(rkviewer.canvas.elements.ReactionCenter method)
onAboutDlg() (rkviewer.view.MainFrame method)
OnCanvasDidUpdate() (rkviewer.view.EditPanel method)
OnChar() (rkviewer.canvas.canvas.Canvas method)
OnChildFocus() (rkviewer.forms.EditPanelForm method)
OnCloseExit() (rkviewer.view.MainFrame method)
OnCompartmentsDidMove() (rkviewer.view.EditPanel method)
OnCompositeShapes() (rkviewer.forms.NodeForm method)
OnDidCommitNodePositions() (rkviewer.canvas.canvas.Canvas method)
OnDidResizeCompartments() (rkviewer.view.EditPanel method)
OnDidResizeNodes() (rkviewer.view.EditPanel method)
OnIdle() (rkviewer.canvas.canvas.Canvas method)
OnLeaveWindow() (rkviewer.canvas.canvas.Canvas method)
OnLeftDown() (rkviewer.canvas.canvas.Canvas method)
(rkviewer.canvas.overlays.CanvasOverlay method)
(rkviewer.canvas.overlays.Minimap method)
OnLeftUp() (rkviewer.canvas.canvas.Canvas method)
(rkviewer.canvas.overlays.CanvasOverlay method)
(rkviewer.canvas.overlays.Minimap method)
OnModifierCheck() (rkviewer.forms.ReactionForm method)
OnMotion() (rkviewer.canvas.canvas.Canvas method)
(rkviewer.canvas.overlays.CanvasOverlay method)
(rkviewer.canvas.overlays.Minimap method)
OnMouseWheel() (rkviewer.canvas.canvas.Canvas method)
OnNodeLockCheckBox() (rkviewer.forms.NodeForm method)
OnNodesDidMove() (rkviewer.view.EditPanel method)
OnNodeStatusChoice() (rkviewer.forms.NodeForm method)
OnPaint() (rkviewer.canvas.canvas.Canvas method)
OnPrintPage() (rkviewer.view.NetworkPrintout method)
OnRightUp() (rkviewer.canvas.canvas.Canvas method)
OnRxnStatusChoice() (rkviewer.forms.ReactionForm method)
OnScroll() (rkviewer.canvas.canvas.Canvas method)
OnSelectionDidUpdate() (rkviewer.view.EditPanel method)
OnShow() (rkviewer.view.MainFrame method)
OnSlider() (rkviewer.canvas.canvas.Canvas method)
OnWindowDestroy() (rkviewer.canvas.canvas.Canvas method)
opacity_mul() (in module rkviewer.utils)
opts (rkviewer.config.RootSchema attribute)
(rkviewer.config.ThemeSchema attribute)
(rkviewer.iodine.AbstractNodeSchema attribute)
(rkviewer.iodine.AliasSchema attribute)
(rkviewer.iodine.CircleSchema attribute)
(rkviewer.iodine.CompartmentSchema attribute)
(rkviewer.iodine.CompositeShapeSchema attribute)
(rkviewer.iodine.FontSchema attribute)
(rkviewer.iodine.HexagonSchema attribute)
(rkviewer.iodine.LineSchema attribute)
(rkviewer.iodine.NetworkSchema attribute)
(rkviewer.iodine.NodeSchema attribute)
(rkviewer.iodine.PolygonSchema attribute)
(rkviewer.iodine.PrimitiveSchema attribute)
(rkviewer.iodine.ReactionSchema attribute)
(rkviewer.iodine.RectangleSchema attribute)
(rkviewer.iodine.SpeciesNode attribute)
(rkviewer.iodine.TextSchema attribute)
(rkviewer.iodine.TransformSchema attribute)
(rkviewer.iodine.TriangleSchema attribute)
Orientation (class in rkviewer.canvas.geometry)
orientation() (in module rkviewer.canvas.geometry)
original_index (rkviewer.canvas.data.Node attribute)
originalIdx (rkviewer.iodine.AliasSchema attribute)
(rkviewer.iodine.TAliasNode attribute)
OTHER (rkviewer.iodine.ErrorCode attribute)
OUT_OF_RANGE (rkviewer.iodine.ErrorCode attribute)
outline_rect() (rkviewer.canvas.elements.SelectBox method)
outlineColor (rkviewer.iodine.CompartmentSchema attribute)
(rkviewer.iodine.TCompartment attribute)
outlineThickness (rkviewer.iodine.CompartmentSchema attribute)
(rkviewer.iodine.TCompartment attribute)
overall_bg (rkviewer.config.ThemeSchema attribute)
,
[1]
OverrideAccelTable() (rkviewer.view.MainFrame method)
P
padded_rect() (in module rkviewer.canvas.geometry)
paint_arrow_tip() (rkviewer.canvas.data.SpeciesBezier method)
paint_handle() (in module rkviewer.canvas.data)
pairwise() (in module rkviewer.utils)
parent (rkviewer.canvas.elements.ReactionCenter attribute)
parse_num_pair() (in module rkviewer.forms)
parse_precisions() (in module rkviewer.forms)
Paste() (rkviewer.canvas.canvas.Canvas method)
peripheral_nodes (rkviewer.canvas.elements.SelectBox attribute)
Pixel (class in rkviewer.config)
PluginDialog (class in rkviewer.plugin_manage)
PluginManager (class in rkviewer.plugin_manage)
PluginPage (class in rkviewer.plugin_manage)
plugins (rkviewer.plugin_manage.PluginManager attribute)
points (rkviewer.canvas.data.HexagonPrim attribute)
(rkviewer.canvas.data.LinePrim attribute)
(rkviewer.canvas.data.PolygonPrim attribute)
(rkviewer.canvas.data.TrianglePrim attribute)
(rkviewer.canvas.state.ArrowTip attribute)
(rkviewer.iodine.HexagonSchema attribute)
(rkviewer.iodine.LineSchema attribute)
(rkviewer.iodine.TriangleSchema attribute)
pointSize (rkviewer.config.Font attribute)
(rkviewer.iodine.FontSchema attribute)
PolygonPrim (class in rkviewer.canvas.data)
PolygonSchema (class in rkviewer.iodine)
pop() (rkviewer.iodine.TStack method)
pop_settings_err() (in module rkviewer.config)
pos_inside() (rkviewer.canvas.elements.BezierHandle method)
(rkviewer.canvas.elements.CanvasElement method)
(rkviewer.canvas.elements.CompartmentElt method)
(rkviewer.canvas.elements.NodeElement method)
(rkviewer.canvas.elements.ReactionCenter method)
(rkviewer.canvas.elements.ReactionElement method)
(rkviewer.canvas.elements.SelectBox method)
position (rkviewer.canvas.data.Compartment attribute)
(rkviewer.canvas.data.Node attribute)
,
[1]
(rkviewer.canvas.data.RectData attribute)
(rkviewer.canvas.overlays.CanvasOverlay property)
(rkviewer.iodine.AbstractNodeSchema attribute)
(rkviewer.iodine.CompartmentSchema attribute)
(rkviewer.iodine.TAbstractNode attribute)
(rkviewer.iodine.TAliasNode attribute)
(rkviewer.iodine.TCompartment attribute)
(rkviewer.iodine.TNode attribute)
post_dump() (rkviewer.iodine.AbstractNodeSchema method)
(rkviewer.iodine.NetworkSchema method)
post_event() (in module rkviewer.events)
post_load() (rkviewer.iodine.AliasSchema method)
(rkviewer.iodine.CircleSchema method)
(rkviewer.iodine.CompartmentSchema method)
(rkviewer.iodine.CompositeShapeSchema method)
(rkviewer.iodine.HexagonSchema method)
(rkviewer.iodine.LineSchema method)
(rkviewer.iodine.NetworkSchema method)
(rkviewer.iodine.NodeSchema method)
(rkviewer.iodine.ReactionSchema method)
(rkviewer.iodine.RectangleSchema method)
(rkviewer.iodine.SpeciesNode method)
(rkviewer.iodine.TextSchema method)
(rkviewer.iodine.TransformSchema method)
(rkviewer.iodine.TriangleSchema method)
pre_load() (rkviewer.iodine.NetworkSchema method)
prev (rkviewer.events.HandlerNode attribute)
Primitive (class in rkviewer.canvas.data)
primitive_brush() (in module rkviewer.canvas.elements)
primitive_dump() (in module rkviewer.iodine)
primitive_load() (in module rkviewer.iodine)
primitive_peninfo() (in module rkviewer.canvas.elements)
PrimitiveFactory (class in rkviewer.canvas.data)
PrimitiveGrid (class in rkviewer.forms)
PrimitiveSchema (class in rkviewer.iodine)
PrimitiveSection (class in rkviewer.forms)
PrintNetwork() (rkviewer.view.MainFrame method)
printReactionInfo() (in module rkviewer.iodine)
produce() (rkviewer.canvas.data.CompositeShapeFactory method)
(rkviewer.canvas.data.PrimitiveFactory method)
product_border (rkviewer.config.ThemeSchema attribute)
,
[1]
products (rkviewer.iodine.ReactionSchema attribute)
(rkviewer.iodine.TReaction attribute)
props_equal() (rkviewer.canvas.data.Node method)
pt_in_circle() (in module rkviewer.canvas.geometry)
pt_in_rect() (in module rkviewer.canvas.geometry)
pt_on_line() (in module rkviewer.canvas.geometry)
push() (rkviewer.iodine.TStack method)
R
r (rkviewer.config.Color attribute)
radius (rkviewer.canvas.data.PolygonPrim attribute)
(rkviewer.iodine.PolygonSchema attribute)
range_validate (rkviewer.config.ColorField attribute)
rate_law (rkviewer.canvas.data.Reaction attribute)
rateLaw (rkviewer.iodine.ReactionSchema attribute)
(rkviewer.iodine.TReaction attribute)
ratio (rkviewer.events.DidResizeCompartmentsEvent attribute)
,
[1]
(rkviewer.events.DidResizeNodesEvent attribute)
,
[1]
react_node_border_width (rkviewer.config.ThemeSchema attribute)
,
[1]
react_node_padding (rkviewer.config.ThemeSchema attribute)
,
[1]
reactant_border (rkviewer.config.ThemeSchema attribute)
,
[1]
reactants (rkviewer.iodine.ReactionSchema attribute)
(rkviewer.iodine.TReaction attribute)
Reaction (class in rkviewer.canvas.data)
reaction (rkviewer.canvas.elements.BezierHandle attribute)
,
[1]
(rkviewer.canvas.elements.ReactionElement attribute)
(rkviewer.events.DidAddReactionEvent attribute)
reaction_fill (rkviewer.config.ThemeSchema attribute)
,
[1]
reaction_idx_map (rkviewer.canvas.canvas.Canvas attribute)
reaction_index (rkviewer.events.DidMoveBezierHandleEvent attribute)
,
[1]
(rkviewer.events.DidMoveReactionCenterEvent attribute)
,
[1]
reaction_indices (rkviewer.events.DidDeleteEvent attribute)
,
[1]
(rkviewer.events.SelectionDidUpdateEvent attribute)
,
[1]
REACTION_LAYER (rkviewer.canvas.canvas.Canvas attribute)
,
[1]
reaction_line_thickness (rkviewer.config.ThemeSchema attribute)
,
[1]
reaction_map (rkviewer.canvas.canvas.Canvas attribute)
reaction_radius (rkviewer.config.ThemeSchema attribute)
,
[1]
ReactionBezier (class in rkviewer.canvas.data)
ReactionCenter (class in rkviewer.canvas.elements)
ReactionElement (class in rkviewer.canvas.elements)
ReactionForm (class in rkviewer.forms)
ReactionIndexError
reactions (rkviewer.canvas.canvas.Canvas property)
(rkviewer.iodine.NetworkSchema attribute)
(rkviewer.iodine.TNetwork attribute)
ReactionSchema (class in rkviewer.iodine)
REAI_NOT_FOUND (rkviewer.iodine.ErrorCode attribute)
real_center (rkviewer.canvas.data.ReactionBezier property)
(rkviewer.canvas.data.SpeciesBezier attribute)
realsize (rkviewer.canvas.canvas.Canvas attribute)
(rkviewer.canvas.overlays.Minimap property)
Rect (class in rkviewer.canvas.geometry)
rect (rkviewer.canvas.data.Compartment property)
(rkviewer.canvas.data.Node property)
RectanglePrim (class in rkviewer.canvas.data)
RectangleSchema (class in rkviewer.iodine)
RectData (class in rkviewer.canvas.data)
RectInWhichCompartment() (rkviewer.canvas.canvas.Canvas method)
rects_overlap() (in module rkviewer.canvas.geometry)
rectSize (rkviewer.iodine.AbstractNodeSchema attribute)
(rkviewer.iodine.CompartmentSchema attribute)
(rkviewer.iodine.TAbstractNode attribute)
(rkviewer.iodine.TAliasNode attribute)
(rkviewer.iodine.TCompartment attribute)
(rkviewer.iodine.TNode attribute)
redo() (in module rkviewer.iodine)
(rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
RedrawModelElements() (rkviewer.canvas.canvas.Canvas method)
reduce2() (rkviewer.canvas.geometry.Vec2 method)
register_menu() (rkviewer.plugin_manage.PluginManager method)
RegisterAllChildren() (rkviewer.canvas.canvas.Canvas method)
related_elts (rkviewer.canvas.elements.SelectBox attribute)
,
[1]
ReloadSettings() (rkviewer.view.MainFrame method)
remove() (rkviewer.canvas.utils.SetSubject method)
(rkviewer.events.HandlerChain method)
RemovePluginElement() (rkviewer.canvas.canvas.Canvas method)
rename_compartment() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
rename_node() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
rename_reaction() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
repeat() (rkviewer.canvas.geometry.Vec2 class method)
require_kwargs_on_init() (in module rkviewer.utils)
reset() (in module rkviewer.iodine)
Reset() (rkviewer.canvas.canvas.Canvas method)
reset_runtime_vars() (in module rkviewer.config)
ResetLayer() (rkviewer.canvas.canvas.Canvas method)
ResetZoom() (rkviewer.canvas.canvas.Canvas method)
RESIZING (rkviewer.canvas.elements.SelectBox.Mode attribute)
resource_path() (in module rkviewer.utils)
rgba_to_wx_colour() (in module rkviewer.utils)
RIGHT (rkviewer.canvas.canvas.Alignment attribute)
(rkviewer.canvas.data.TextAlignment attribute)
(rkviewer.canvas.geometry.Direction attribute)
RKView (class in rkviewer.view)
rkviewer
module
rkviewer.canvas
module
rkviewer.canvas.canvas
module
rkviewer.canvas.data
module
rkviewer.canvas.elements
module
rkviewer.canvas.geometry
module
rkviewer.canvas.overlays
module
rkviewer.canvas.state
module
rkviewer.canvas.utils
module
rkviewer.config
module
rkviewer.controller
module
rkviewer.events
module
rkviewer.forms
module
rkviewer.iodine
module
rkviewer.main
module
rkviewer.mvc
module
rkviewer.plugin_manage
module
rkviewer.utils
module
rkviewer.view
module
RootSchema (class in rkviewer.config)
rotate_unit() (in module rkviewer.canvas.geometry)
rotation (rkviewer.canvas.data.Transform attribute)
(rkviewer.iodine.TransformSchema attribute)
runtime_vars() (in module rkviewer.config)
RuntimeVariables (class in rkviewer.config)
S
s_position (rkviewer.canvas.data.Node property)
s_rect (rkviewer.canvas.data.Node property)
s_size (rkviewer.canvas.data.Node property)
save_appSettings() (rkviewer.config.AppSettings method)
SaveAsJson() (rkviewer.view.MainFrame method)
SaveJson() (rkviewer.view.MainFrame method)
scale (rkviewer.canvas.data.Transform attribute)
(rkviewer.canvas.state.CanvasState attribute)
,
[1]
(rkviewer.iodine.TransformSchema attribute)
segment_intersects_line() (in module rkviewer.canvas.geometry)
segment_rect_intersection() (in module rkviewer.canvas.geometry)
segments_intersect() (in module rkviewer.canvas.geometry)
sel_compartments_idx (rkviewer.canvas.canvas.Canvas attribute)
sel_comps (rkviewer.canvas.canvas.Canvas attribute)
sel_nodes (rkviewer.canvas.canvas.Canvas attribute)
sel_nodes_idx (rkviewer.canvas.canvas.Canvas attribute)
sel_reactions_idx (rkviewer.canvas.canvas.Canvas attribute)
SELECT (rkviewer.canvas.state.InputMode attribute)
select_box (rkviewer.canvas.canvas.Canvas property)
SELECT_BOX_LAYER (rkviewer.canvas.canvas.Canvas attribute)
,
[1]
select_box_padding (rkviewer.config.ThemeSchema attribute)
,
[1]
select_handle_length (rkviewer.config.ThemeSchema attribute)
,
[1]
select_outline_padding (rkviewer.config.ThemeSchema attribute)
,
[1]
select_outline_width (rkviewer.config.ThemeSchema attribute)
,
[1]
SelectAll() (rkviewer.canvas.canvas.Canvas method)
SelectAllNodes() (rkviewer.canvas.canvas.Canvas method)
SelectAllReactions() (rkviewer.canvas.canvas.Canvas method)
SelectBox (class in rkviewer.canvas.elements)
SelectBox.Mode (class in rkviewer.canvas.elements)
SelectBox.SMode (class in rkviewer.canvas.elements)
selected (rkviewer.canvas.elements.ReactionElement property)
selected_idx (rkviewer.forms.EditPanelForm property)
selected_nodes (rkviewer.forms.NodeForm property)
selected_reaction_fill (rkviewer.config.ThemeSchema attribute)
,
[1]
SelectionDidUpdateEvent (class in rkviewer.events)
self_changes (rkviewer.forms.EditPanelForm attribute)
(rkviewer.forms.ReactionForm attribute)
set_application_position() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_center_handle() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_compartment_border() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_compartment_border_width() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_compartment_fill() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_compartment_of_node() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_compartment_size() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_compartment_volume() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_dest_node_handle() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_dest_node_stoich() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_item() (rkviewer.canvas.utils.SetSubject method)
set_layers() (rkviewer.canvas.elements.CanvasElement method)
set_modifier_tip_style() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_node_border_alpha() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_node_border_rgb() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_node_border_width() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_node_fill_alpha() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_node_fill_rgb() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_node_floating_status() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_node_locked_status() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_node_primitive_property() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_node_shape_index() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_node_size() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_reaction_bezier_curves() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_reaction_center() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_reaction_fill_alpha() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_reaction_fill_rgb() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_reaction_line_thickness() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_reaction_modifiers() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_reaction_ratelaw() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_src_node_handle() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
set_src_node_stoich() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
setCompartmentFillColor() (in module rkviewer.iodine)
setCompartmentID() (in module rkviewer.iodine)
setCompartmentOfNode() (in module rkviewer.iodine)
setCompartmentOutlineColor() (in module rkviewer.iodine)
setCompartmentOutlineThickness() (in module rkviewer.iodine)
setCompartmentPosition() (in module rkviewer.iodine)
setCompartmentSize() (in module rkviewer.iodine)
setCompartmentVolume() (in module rkviewer.iodine)
setDefaultHandles() (rkviewer.canvas.canvas.Canvas method)
setModifierTipStyle() (in module rkviewer.iodine)
setNodeBorderColorAlpha() (in module rkviewer.iodine)
setNodeBorderColorRGB() (in module rkviewer.iodine)
setNodeBorderWidth() (in module rkviewer.iodine)
setNodeCoordinate() (in module rkviewer.iodine)
setNodeFillColorAlpha() (in module rkviewer.iodine)
setNodeFillColorRGB() (in module rkviewer.iodine)
setNodeFloatingStatus() (in module rkviewer.iodine)
setNodeID() (in module rkviewer.iodine)
setNodeLockedStatus() (in module rkviewer.iodine)
setNodePrimitiveProperty() (in module rkviewer.iodine)
setNodeShapeIndex() (in module rkviewer.iodine)
setNodeSize() (in module rkviewer.iodine)
SetOriginPos() (rkviewer.canvas.canvas.Canvas method)
SetOverlayPositions() (rkviewer.canvas.canvas.Canvas method)
setRateLaw() (in module rkviewer.iodine)
setReactionBezierCurves() (in module rkviewer.iodine)
setReactionCenterHandlePosition() (in module rkviewer.iodine)
setReactionCenterPos() (in module rkviewer.iodine)
setReactionDestNodeHandlePosition() (in module rkviewer.iodine)
setReactionDestNodeStoich() (in module rkviewer.iodine)
setReactionFillColorAlpha() (in module rkviewer.iodine)
setReactionFillColorRGB() (in module rkviewer.iodine)
setReactionID() (in module rkviewer.iodine)
setReactionLineThickness() (in module rkviewer.iodine)
setReactionModifiers() (in module rkviewer.iodine)
setReactionSrcNodeHandlePosition() (in module rkviewer.iodine)
setReactionSrcNodeStoich() (in module rkviewer.iodine)
SetSubject (class in rkviewer.canvas.utils)
setup_logging() (in module rkviewer.main)
SetValidationState() (rkviewer.forms.FieldGrid method)
SetZoomLevel() (rkviewer.canvas.canvas.Canvas method)
shape (rkviewer.iodine.NodeSchema attribute)
(rkviewer.iodine.TNode attribute)
shape_index (rkviewer.canvas.data.Node attribute)
shapei (rkviewer.iodine.TNode attribute)
ShowDefaultSettings() (rkviewer.view.MainFrame method)
ShowWarningDialog() (rkviewer.canvas.canvas.Canvas method)
sides() (rkviewer.canvas.geometry.Rect method)
size (rkviewer.canvas.data.Compartment attribute)
(rkviewer.canvas.data.Node attribute)
,
[1]
(rkviewer.canvas.data.RectData attribute)
(rkviewer.canvas.overlays.CanvasOverlay property)
source (rkviewer.events.DidCommitDragEvent attribute)
sources (rkviewer.canvas.data.Reaction property)
special_mode (rkviewer.canvas.elements.SelectBox attribute)
SpeciesBezier (class in rkviewer.canvas.data)
SpeciesNode (class in rkviewer.iodine)
SplitAliasesOnReactions() (rkviewer.canvas.canvas.Canvas method)
src_beziers (rkviewer.canvas.data.ReactionBezier attribute)
,
[1]
src_c_handle (rkviewer.canvas.data.Reaction attribute)
(rkviewer.canvas.data.ReactionBezier attribute)
src_handle_moved() (rkviewer.canvas.data.ReactionBezier method)
srcMap (rkviewer.iodine.TNetwork attribute)
STACK_EMPTY (rkviewer.iodine.ErrorCode attribute)
StackEmptyError
start_file() (in module rkviewer.utils)
startGroup() (in module rkviewer.iodine)
stoich (rkviewer.forms.StoichInfo attribute)
(rkviewer.iodine.SpeciesNode attribute)
(rkviewer.iodine.TSpeciesNode attribute)
StoichError
StoichInfo (class in rkviewer.forms)
StoichSection (class in rkviewer.forms)
style (rkviewer.iodine.FontSchema attribute)
Subject (class in rkviewer.canvas.utils)
swapped() (rkviewer.canvas.geometry.Vec2 method)
(rkviewer.config.Color method)
T
TabbedToolbar (class in rkviewer.view)
TAbstractNode (class in rkviewer.iodine)
tail (rkviewer.events.HandlerChain attribute)
TAliasNode (class in rkviewer.iodine)
targets (rkviewer.canvas.data.Reaction property)
tcolor_to_wx() (rkviewer.controller.Controller method)
TCompartment (class in rkviewer.iodine)
TEE (rkviewer.canvas.data.ModifierTipStyle attribute)
text (rkviewer.canvas.data.ChoiceItem property)
text_field_bg (rkviewer.config.ThemeSchema attribute)
,
[1]
text_field_border (rkviewer.config.ThemeSchema attribute)
,
[1]
text_field_fg (rkviewer.config.ThemeSchema attribute)
,
[1]
text_item (rkviewer.canvas.data.CompositeShape attribute)
(rkviewer.iodine.CompositeShapeSchema attribute)
TextAlignment (class in rkviewer.canvas.data)
TextPrim (class in rkviewer.canvas.data)
TextSchema (class in rkviewer.iodine)
theme (rkviewer.config.RootSchema attribute)
,
[1]
ThemeSchema (class in rkviewer.config)
thickness (rkviewer.canvas.data.Reaction property)
(rkviewer.canvas.data.SpeciesBezier attribute)
(rkviewer.iodine.ReactionSchema attribute)
(rkviewer.iodine.TReaction attribute)
tip (rkviewer.canvas.data.HandleData attribute)
,
[1]
tipStyle (rkviewer.iodine.ReactionSchema attribute)
(rkviewer.iodine.TReaction attribute)
TNetwork (class in rkviewer.iodine)
TNetworkDict (class in rkviewer.iodine)
TNode (class in rkviewer.iodine)
to_tuple() (rkviewer.events.CanvasEvent method)
to_wx_point() (rkviewer.canvas.geometry.Vec2 method)
to_wx_rect() (rkviewer.canvas.geometry.Rect method)
to_wxcolour() (rkviewer.config.Color method)
ToggleEditPanel() (rkviewer.view.MainPanel method)
Toolbar (class in rkviewer.view)
toolbar_bg (rkviewer.config.ThemeSchema attribute)
,
[1]
toolbar_fg (rkviewer.config.ThemeSchema attribute)
toolbar_height (rkviewer.config.ThemeSchema attribute)
ToolbarItem (class in rkviewer.view)
TOP (rkviewer.canvas.canvas.Alignment attribute)
(rkviewer.canvas.geometry.Direction attribute)
Transform (class in rkviewer.canvas.data)
TransformSchema (class in rkviewer.iodine)
translation (rkviewer.canvas.data.Transform attribute)
(rkviewer.iodine.TransformSchema attribute)
TReaction (class in rkviewer.iodine)
TrianglePrim (class in rkviewer.canvas.data)
TriangleSchema (class in rkviewer.iodine)
TSpeciesNode (class in rkviewer.iodine)
TStack (class in rkviewer.iodine)
twin (rkviewer.canvas.elements.BezierHandle attribute)
,
[1]
U
unbind_handler() (in module rkviewer.events)
undo() (in module rkviewer.iodine)
(rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
union() (rkviewer.canvas.geometry.Rect method)
(rkviewer.canvas.utils.SetSubject method)
update() (rkviewer.canvas.elements.SelectBox method)
update_all() (rkviewer.mvc.IView method)
(rkviewer.view.RKView method)
update_curve() (rkviewer.canvas.data.SpeciesBezier method)
update_view() (rkviewer.controller.Controller method)
(rkviewer.mvc.IController method)
UpdateAllFields() (rkviewer.forms.CompartmentForm method)
(rkviewer.forms.EditPanelForm method)
(rkviewer.forms.NodeForm method)
(rkviewer.forms.ReactionForm method)
UpdateCompartments() (rkviewer.forms.CompartmentForm method)
UpdateNodes() (rkviewer.forms.NodeForm method)
UpdatePrimitiveValues() (rkviewer.forms.PrimitiveSection method)
UpdateSelection() (rkviewer.forms.CompartmentForm method)
(rkviewer.forms.NodeForm method)
(rkviewer.forms.ReactionForm method)
UpdateValues() (rkviewer.forms.PrimitiveGrid method)
V
validate_schema() (in module rkviewer.config)
validateNodes() (in module rkviewer.iodine)
validateState() (in module rkviewer.iodine)
value (rkviewer.canvas.data.ChoiceItem property)
Vec2 (class in rkviewer.canvas.geometry)
VERTICAL (rkviewer.canvas.canvas.Alignment attribute)
vgap (rkviewer.config.ThemeSchema attribute)
,
[1]
view (rkviewer.controller.Controller attribute)
volume (rkviewer.canvas.data.Compartment attribute)
(rkviewer.iodine.CompartmentSchema attribute)
(rkviewer.iodine.TCompartment attribute)
W
weight (rkviewer.iodine.FontSchema attribute)
window_pos (rkviewer.canvas.overlays.Minimap attribute)
,
[1]
window_size (rkviewer.canvas.overlays.Minimap attribute)
,
[1]
wx_to_tcolor() (rkviewer.controller.Controller method)
X
x (rkviewer.canvas.geometry.Vec2 property)
Y
y (rkviewer.canvas.geometry.Vec2 property)
Z
ZOOM (rkviewer.canvas.state.InputMode attribute)
zoom_level (rkviewer.canvas.canvas.Canvas property)
zoom_slider (rkviewer.canvas.canvas.Canvas attribute)
zoom_slider_bg (rkviewer.config.ThemeSchema attribute)
,
[1]
ZoomCenter() (rkviewer.canvas.canvas.Canvas method)
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